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View Structure Prediction Details

Protein: CE17720
Organism: Caenorhabditis elegans
Length: 90 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17720.

Description E-value Query
Range
Subject
Range
gi|157757849 - gi|157757849|ref|XP_001671268.1| Hypothetical protein CBG01648 [Caenorhabditis briggsae AF16]
gi|187038052, gi... - gi|39587562|emb|CAE58500.1| Hypothetical protein CBG01648 [Caenorhabditis briggsae], gi|187038052|em...
167.0 [0..1] [90..1]
CE38479 - status:Predicted UniProt:Q52GY9 protein_id:CAI91178.1
156.0 [0..1] [89..1]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAASATRNM LHQYGRRAIG ISLIASVGAT AAFFFGYVQP RHEKYERFFA NYDPYTRMKE  60
   61 ICAANKGYMH TCPQELAKLY EEKGKTVADL 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.68
Match: 1occI
Description: Mitochondrial cytochrome c oxidase subunit VIc
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle