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View Structure Prediction Details

Protein: inx-4
Organism: Caenorhabditis elegans
Length: 554 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-4.

Description E-value Query
Range
Subject
Range
gi|157762122 - gi|157762122|ref|XP_001673403.1| Hypothetical protein CBG08617 [Caenorhabditis briggsae AF16]
gi|187032501, gi... - gi|39583932|emb|CAE64022.1| Hypothetical protein CBG08617 [Caenorhabditis briggsae], gi|187032501|em...
665.0 [0..16] [554..1]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENKLQLVE RRQHPLISGQ GRESSGYHHA AVVEVGAMVL QNMFSALSFL HYRKDDDFVD  60
   61 RLSYFYTSSF LIMMAVLVSF KQFGGRPLEC WVPAQFTASW EAYTEMYCWA QNTYWVPIDQ 120
  121 DIPVDISERE YRQISYYQWV PFFLLLQAFL YYIPCLMWRL MSDKSGIRLN DIVQMATEKE 180
  181 NIE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDYRIRTIES LSRHIESALR YQHTATSRTQ YTLHRVFKCF NMRYYESYVT GMYLATKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [242-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVGNILTNL VLVNKFLETD EYSIYGLGVL RDLLFGRTWI ESGNFPRVTL CDFEVRVLGN  60
   61 NQRHSVQCVL VINIFNEKIF ILIWLWFTLL FVASTLDMLY WFSISMFHRD RFRFVLRHLE 120
  121 LTSDPDKPEL FRKEKRKQVE HFLRTYLKVD GVLVLRMIAL HAGVMFCTEI TDALWKRYLS 180
  181 QHPE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLIDDDSSLI TFARAQSIRR KRNDSSNSDG QNHQRLGRIL SHRSTGGSFR LNRTQSTNRS  60
   61 LNTENKTGAA TGSNAAASPN TPPPVPNSRF GKVKPRRTVV TINSQQNDAR TSPDPIQEMS 120
  121 RMENVPLAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle