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View Structure Prediction Details

Protein: CE17615
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17615.

Description E-value Query
Range
Subject
Range
gi|157774523 - gi|157774523|ref|XP_001665327.1| hypothetical protein CBG10074 [Caenorhabditis briggsae AF16]
gi|39590826, gi|... - gi|39590826|emb|CAE65199.1| Hypothetical protein CBG10074 [Caenorhabditis briggsae], gi|187031520|em...
581.0 [0..1] [419..1]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDQLSDFL LEVSKSGAAV PNKLPDKREE NHLKKKFLNK VAPNSLFAAN YIASNYTDVD  60
   61 LIQSIIGQIL SIYYKEGVLR LYALQFVPGF VSLYLLALSK KQHKSISLFE TFLIAIYNEE 120
  121 IVDGSESNEK KMEDIRIPSI RHHSVYHDPA KIQVQTDVPV MRNASITPVL NTLRFGPFPS 180
  181 VSKMNGENKF MIINRILFSV NESLFEVASE VAARYVCLGT LS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VCRSGFTFPE TAFRSRVLDT ESHEIIEDFS KKPRQQVSGE FLNHLLRGCY LALFNGAADL  60
   61 ALQAIDAIHL RAQYEMLPDT LLVVNSLRNS LLDNMWSKEK RGELMWTRPQ HKDQTKRRDM 120
  121 VTNASLKMKR MPEDI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLERQKEST SSRFNELMEE GIDHLHDLKK KVEKVKGGLH QKMHRRRKSV EPEENELQTI  60
   61 KVRRGFGWKF WGKIGGGKRE KKCQKPFENA HKNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle