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View Structure Prediction Details

Protein: fbxa-141
Organism: Caenorhabditis elegans
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-141.

Description E-value Query
Range
Subject
Range
fbxa-65 - status:Confirmed UniProt:O45159 protein_id:AAC04395.1
185.0 [0..23] [326..14]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSVRTGNAV CSNDKVLRQR QMTSHSAWHN LPLQFRKGVI EILDYKTRCQ LRKCSRKDKN  60
   61 LVDIVPIRSK WLSMSVYNRS ITLQLERMKI EYFNFDPKEN NILRTEYTEK AGEYPVKKEI 120
  121 DRIVHGDLDL VVMDILLLLA HENSFLDNLV LQYAEGINPE RMQLLNQTLF SQIKTLDPKW 180
  181 KIRTSSFYIS FVTTGEKILE YIGLLSFEHL NHIRIKNTNF NQEQLEQFVA MDQWKHAKSM 240
  241 FLEDLNDISV AQFSHFETFW TNVTRLEPVD AWNVIKSYIK RNSPRGAFFH VGT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [294-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANPIEPSQIS DLFDVEVKNE PIDTPWPSSQ VLHTQKFCLP SEDHVLIVLI LNNVLTGRIC  60
   61 HLNHLAEDCN QLYNDYFEEY SQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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