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View Structure Prediction Details

Protein: col-138
Organism: Caenorhabditis elegans
Length: 281 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-138.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
247.0 [0..46] [279..1518]

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Predicted Domain #1
Region A:
Residues: [1-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEDRQSVKK FAFFGIAAST VATLTVVMAV PMLCLYLQNI QSGLQDDLTF CKSRTDSLRG  60
   61 EYTRLAAYRD SAVATLRQKR STNEKCCSCG TGTAGPVGAP GDDGAPGSDG KAGKPGVNGK 120
  121 DADAQQIPTA DDFCFECEPS PVGPPGPPGP KGPDGESGAP GEPGPAGRPG NKGAPGPAGP 180
  181 VGADGEPGEL GAPGAPGVQR TVASPVGEPG EPGEQGPKGE AGQDGRPGQP GRQGPQGEPG 240
  241 QNGKDGEPGK DGVDGEPGKP GEDGPKGSCD HCPPPRTAPG Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle