YRC Public Data Repository - Protein Structure Prediction

Protein:	ilys-1
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ilys-1.

Description	E-value	Query Range	Subject Range
ilys-5 - status:Confirmed UniProt:Q19698 protein_id:AAA83197.1	143.0	[0..1]	[144..1]
gi\|157770226 - gi\|157770226\|ref\|XP_001676933.1\| Hypothetical protein CBG10836 [Caenorhabditis briggsae AF16] gi\|187030632, gi... - gi\|39586708\|emb\|CAE65750.1\| Hypothetical protein CBG10836 [Caenorhabditis briggsae], gi\|187030632\|em...	140.0	[0..1]	[144..1]
gi\|116131741, gi... - gi\|119113335\|ref\|XP_309527.3\| AGAP011119-PA [Anopheles gambiae str. PEST], gi\|116131741\|gb\|EAA05103.... gi\|49089585 - gi\|49089585\|gb\|AAT51799.1\| lysozyme i-1 [Anopheles gambiae]	123.0	[0..12]	[140..32]
gi\|39653268 - gi\|39653268\|gb\|AAR29291.1\| lysozyme [Asterias rubens]	120.0	[0..10]	[140..23]
gi\|23263574 - gi\|23263574\|gb\|AAN16207.1\| lysozyme [Mytilus edulis]	119.0	[0..9]	[139..52]
gi\|23263580 - gi\|23263580\|gb\|AAN16210.1\| lysozyme [Mytilus galloprovincialis]	118.0	[0..8]	[139..51]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIHSLFKSH VEASWGISDQ CMHCMCLGNF VIKLPYYIDC GEPGKQRGES TESAWKRCAD  60
   61 DLDCAETCMM NYYHRYKSQC NGLGMSECEA SFQNYYHRYK SQCDGLGMGE CEVFARNHNG 120
  121 GPTGCRNPGT LEYWQSIQKC CGGSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2dqaA
Description:	No description for 2dqaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits