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View Structure Prediction Details

Protein: col-113
Organism: Caenorhabditis elegans
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-113.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
328.0 [0..31] [347..1388]

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Predicted Domain #1
Region A:
Residues: [1-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLSTQRAG FTACVFSGGA ILVCLVYVPS LVTKIQNIND QLKVDSEEFR AMADYTWREL  60
   61 ITMRRGKRQA YGDSPKKTYP LHTAYVKEDA FVEGASTCSC NQNNGCPAGQ AGAAGKPGLD 120
  121 GEPGKSGEPG APGLAGIAPP VTIDPTKGCR VCPNGPRGPT GPPGETGPSG PEGPPGNPGR 180
  181 IGEHGREGYP GQQGIPGEPG KPGKLGEAGP NGRDGTRGQK GPIGPKGDSG PPGQKGPSGY 240
  241 PGRDGQRGND GESGPVGPSG QLGMPGEPGQ IGMVGAPGAP GQDASYCKCP ERNAGVNKFE 300
  301 PPPIEQPSYE PQPSTSQPAT YAPAPATPGP DAAVEAPRSP YRKWKWLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle