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View Structure Prediction Details

Protein: CE17464
Organism: Caenorhabditis elegans
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17464.

Description E-value Query
Range
Subject
Range
gi|39593148, gi|... - gi|39593148|emb|CAE64617.1| Hypothetical protein CBG09375 [Caenorhabditis briggsae], gi|187031899|em...
gi|157763694 - gi|157763694|ref|XP_001674189.1| Hypothetical protein CBG09375 [Caenorhabditis briggsae AF16]
418.0 [0..1] [316..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENIPDIDP NELLPNAPGQ HQDLGVDNPP EPDNASIRAE RGSPTPSSVT VDNAPSLPDR  60
   61 SFSHLPINDP FSGEIPEVPI PSSAISISSQ ALSDPVPTPS DTSRPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILRNDEQGST SSHPVDPQEP NEVNNEYLAH LLDLGFDEYT AVLALKRTNS AGVEQAVAWI  60
   61 VERSNESDFD EDSSSSENEA DEEMGAVQSV AGRTHKMVLV AN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.79
Match: 2dagA
Description: No description for 2dagA was found.

Predicted Domain #3
Region A:
Residues: [209-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKMGTGKI AAQVGHATLG VYRQAMNSEN GQNAIAAWTR HGQVKIVVKG QSTEQLMDLC  60
   61 KVAKDAGCYY YLVQDAGYTQ IPAGSRTVLG IFGTVEQVDS VTGGLKLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 1q7sA
Description: Crystal structure of bit1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle