YRC Public Data Repository - Protein Structure Prediction

Protein:	glb-7
Organism:	Caenorhabditis elegans
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-7.

Description	E-value	Query Range	Subject Range
HMP_BACHD - Flavohemoprotein OS=Bacillus halodurans GN=hmp PE=3 SV=1 HMP_BACHD - Flavohemoprotein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-...	230.0	[0..3]	[274..2]
gi\|56908365, gi\|... - gi\|56962130\|ref\|YP_173853.1\| nitric oxide dioxygenase [Bacillus clausii KSM-K16], gi\|56908365\|dbj\|BA...	224.0	[0..3]	[274..2]
gi\|84356888, gi\|... - gi\|84356888\|ref\|ZP_00981721.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...	223.0	[0..4]	[276..1]
gi\|67665880, gi\|... - gi\|67665880\|ref\|ZP_00463137.1\| Globin:Oxidoreductase FAD/NAD(P)-binding [Burkholderia cenocepacia HI...	223.0	[0..4]	[276..1]
gi\|105892002, gi... - gi\|67658233\|ref\|ZP_00455606.1\| Globin:Oxidoreductase FAD/NAD(P)-binding [Burkholderia cenocepacia AU...	222.0	[0..4]	[276..1]
HMP_RHIME - Flavohemoprotein OS=Rhizobium meliloti GN=hmp PE=3 SV=2 HMP_RHIME - Flavohemoprotein OS=Rhizobium meliloti (strain 1021) GN=hmp PE=3 SV=2	222.0	[0..7]	[272..2]
gi\|115350681, gi... - gi\|74017095\|ref\|ZP_00687720.1\| Globin:Oxidoreductase FAD/NAD(P)-binding [Burkholderia ambifaria AMMD...	221.0	[0..4]	[275..1]
gi\|77966044, gi\|... - gi\|78065299\|ref\|YP_368068.1\| hemoglobin-like flavoprotein [Burkholderia sp. 383], gi\|77966044\|gb\|ABB...	221.0	[0..4]	[275..1]
gi\|33089388 - gi\|33089388\|gb\|AAP93662.1\| flavohemoglobin [Sinorhizobium meliloti]	220.0	[0..7]	[272..2]
gi\|134294810, gi... - gi\|67547629\|ref\|ZP_00425530.1\| Globin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding r...	218.0	[0..4]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALNRFSQE EKDILRRSWK VLDKNLNHTA YNIFEMIFNQ SPDTRQLFPF MKFNTGGRSK  60
   61 EIEFHALRFM QVLESVVKTL DNPETLNPLC DNLGRVHGRL SESRGFRTHH WGVFIECTLF 120
  121 HFRKVLGQDT YFHRMDALDK VIINWRIIIR LLIKQMKRGF NTDIKNRQAS RELEESNKAS 180
  181 TSSSPISQES CSLGTGLRKN SRQLMFLAVP GAAAATMSQS LTLPAINNNN YRKGSDSRLS 240
  241 TVSALSATSV SPAIERAPST GLLRPLKEFA RRRFINHF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1cqxA
Description:	Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.52421953607929	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: