YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: col-102
Organism: Caenorhabditis elegans
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-102.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
421.0 [0..42] [451..1388]

Back

Predicted Domain #1
Region A:
Residues: [1-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQAVLGVVN TVTAVSVITA ILLSVAILVD INNFSDEVSQ DLTQFRGYYD DAWRTMMVNE  60
   61 GMKGLTARIS RQAGYATGGS QQCNCGSQAA GCPAGPPGAA GEDGTPGEPG TDGEDGGNGM 120
  121 PGVAQMAMDA NGGACIKCPA GEPGPPGPEG PAGPAGPAGN AGADGEAGAE GPAGEAGPPG 180
  181 PPGPDGKPGA AGSDGEAGAP GTKTTNAPGE PGPAGPPGPP GPNGEAGAGS GPGPEGPAGP 240
  241 PGPNGKDGEA GAPGKDGDAG ADGAPGTDAA YCPCPPRSAA LGAGGGAEPA GAAPEAAAAA 300
  301 PEAAPEAAPA AEGAGGGAEP AGAAAPDAAA AAPEAAPAEA APAAEGAGGG AEPAGAAPDA 360
  361 AAAAPEAAPA EAAPAAEGAG GGAEPAGAAA PDAAAAAPEA AAAPEAAPAA EGAGGGAEPA 420
  421 GAAPEAAAAA PEGAGGGEAP PTNGKGGEAS PAYPTGQSSY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle