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View Structure Prediction Details

Protein: CE17407
Organism: Caenorhabditis elegans
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17407.

Description E-value Query
Range
Subject
Range
CE28705 - status:Predicted UniProt:Q95NJ7 protein_id:CAB03891.2
580.0 [0..1] [418..1]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNPVYSP LPLSGTNISQ AEARSHPSKK IVALVLVGTL FFLFSFFLAV ALFGGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.045757
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [57-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STDSDLEPDH QTLTTQNEPI QLGNHRYFAF KYEIVRGKYS HTNKDGSAVK PFIVKNVERH  60
   61 SDEEPYDVYL QKKKRNEEGM IYWKFNLTST GKVLETLVIR MVGINQTLNG GGKAEACLDT 120
  121 FENCMEIPVN QDLIIDKPQA DTLFLGIKMY KNMKVFGHAE KCMECRELES GFLVKAYWAQ 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.42
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #3
Region A:
Residues: [237-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THLLNISTTY HQGSGPAFAL TPKTGENSAK FKYNFINNSY SHTQPDGSPI RLFNFNGMER  60
   61 VEDYTESDVF LRREIPEKKG NIGWALDLKI DGKSVEKVVI RMIGIEEIAN GGGTARACGH 120
  121 YPTIYPKCAD IPINGTFTFT NYPLDRLFLD IELDEDIQIF KTKLDDESSV ENVSVEVYWS 180
  181 ECIGYCRVTV GVLSALSFRI TAGLLLGTVE SPARIILLIW FFIIFFN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle