YRC Public Data Repository - Protein Structure Prediction

Protein:	CE17326
Organism:	Caenorhabditis elegans
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17326.

Description	E-value	Query Range	Subject Range
LITAF_RAT - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Rattus norvegicus GN=Litaf ...	103.0	[0..1]	[84..74]
CE20251 - WD domain, G-beta repeat status:Partially_confirmed UniProt:Q9XWU3 protein_id:CAA21549.1	103.0	[0..3]	[84..16]
gi\|86438436, gi\|... - gi\|86438436\|gb\|AAI12871.1\| Lipopolysaccharide-induced TNF factor [Bos taurus], gi\|114053111\|ref\|NP_0...	102.0	[0..1]	[84..74]
gi\|73959129 - gi\|73959129\|ref\|XP_547124.2\| PREDICTED: similar to LPS-induced TN factor [Canis familiaris]	102.0	[0..1]	[84..74]
LITAF_MOUSE - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Mus musculus GN=Litaf PE=1 ...	102.0	[0..1]	[84..74]
LITAF_XENTR - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Xenopus tropicalis GN=litaf...	100.0	[0..1]	[84..61]
LITAF_CHICK - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Gallus gallus GN=LITAF PE=2...	99.0	[0..1]	[84..60]
gi\|109127600 - gi\|109127600\|ref\|XP_001105141.1\| PREDICTED: similar to LPS-induced TNF-alpha factor [Macaca mulatta]	99.0	[0..1]	[84..74]
sp\|Q99732-5\|LITA... - Lipopolysaccharide-induced tumor necrosis factor-alpha factor OS=Homo sapiens GN=LITAF PE=1 SV=2 VAR... gi\|114661009, gi... - gi\|114661013\|ref\|XP_001142807.1\| PREDICTED: LPS-induced TNF-alpha factor isoform 4 [Pan troglodytes]...	99.0	[0..1]	[84..74]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPITVYGP KMTEHYEPYS EYCPKCQCNH TTRMESRRGN CWWIAFFIGF FLFFPICYWL  60
   61 CCQSSKDTLH YCPSCGTLLA TRQGGCS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	2f42A
Description:	No description for 2f42A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits