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View Structure Prediction Details

Protein: gi|25396627
Organism: Caenorhabditis elegans
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25396627.

Description E-value Query
Range
Subject
Range
par-1 - serine\/threonine kinase (KIN1\/SNF1\/Nim1 subfamily) status:Confirmed UniProt:Q9TW45 protein_id:CAB...
160.0 [0..1] [136..1]
gi|66734180 - gi|66734180|gb|AAY53487.1| serine/threonine protein kinase par-1 [Caenorhabditis remanei]
53.0 [0..71] [138..5]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSASVGKKP EHVNTPPGDN QQKSSKENQK SNKDKQSSNQ PPGQIPHSTN SGTRKSSGSG  60
   61 LKTANLKHPA RPSTESSTSS SHHRRPAQEM NGTSTATATG GGGTSGATTT ASSGAPAASS 120
  121 GGSSARYSSS GRSHPTSGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.245 a.1.1 Globin-like
View Download 0.236 d.110.4 SNARE-like
View Download 0.227 d.81.3 Description not found.
View Download 0.226 a.24.9 alpha-catenin/vinculin
View Download 0.203 b.82.3 cAMP-binding domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle