YRC Public Data Repository - Protein Structure Prediction

Protein:	CE17274
Organism:	Caenorhabditis elegans
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17274.

Description	E-value	Query Range	Subject Range
gi\|187023854, gi... - gi\|39588478\|emb\|CAE72829.1\| Hypothetical protein CBG20111 [Caenorhabditis briggsae], gi\|187023854\|em... gi\|157757491 - gi\|157757491\|ref\|XP_001671089.1\| Hypothetical protein CBG20111 [Caenorhabditis briggsae AF16]	254.0	[0..1]	[183..1]
gi\|76628982 - gi\|76628982\|ref\|XP_597438.2\| PREDICTED: similar to PRPK (p53-related protein kinase)-binding protein...	251.0	[0..1]	[182..168]
TPRKB_MOUSE - EKC/KEOPS complex subunit Tprkb OS=Mus musculus GN=Tprkb PE=1 SV=1	241.0	[0..1]	[182..1]
gi\|149036592, gi... - gi\|62422579\|ref\|NP_001013948.2\| Prpk (p53-related protein kinase)-binding protein [Rattus norvegicus...	238.0	[0..1]	[182..1]
TPRKB - TP53RK binding protein	237.0	[0..1]	[182..1]
gi\|109103387 - gi\|109103387\|ref\|XP_001105548.1\| PREDICTED: similar to PRPK (p53-related protein kinase)-binding pro...	235.0	[0..1]	[182..1]
gi\|57098381 - gi\|57098381\|ref\|XP_533004.1\| PREDICTED: similar to PRPK (p53-related protein kinase)-binding protein...	232.0	[0..1]	[182..1]
gi\|148229425, gi... - gi\|28175286\|gb\|AAH45235.1\| MGC53277 protein [Xenopus laevis], gi\|148229425\|ref\|NP_001079622.1\| hypot...	232.0	[0..1]	[182..1]
gi\|39794363, gi\|... - gi\|45361497\|ref\|NP_989325.1\| hypothetical protein MGC75657 [Xenopus (Silurana) tropicalis], gi\|39794...	231.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHSHLYELQ PDPYDFTQRK TCRVCLFKDV KNAAELSQQL KEGKIDAALI RAELVLEPFV  60
   61 LLAAANRAVH QSAHNRMSCR SLAAELVYSL SPSRNITDSL VTFGIAEHST AIIAAIFDDD 120
  121 SGKAMKKLAK AIKGTPVPLM EGLPKFANVN MIKKVYQVGN PAFVEEGLSD HIVSRMVSKD 180
  181 FVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	1zd0A
Description:	Crystal structure of Pfu-542154 conserved hypothetical protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits