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View Structure Prediction Details

Protein: CE17241
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17241.

Description E-value Query
Range
Subject
Range
gi|157757711 - gi|157757711|ref|XP_001671199.1| Hypothetical protein CBG01734 [Caenorhabditis briggsae AF16]
gi|39587631, gi|... - gi|39587631|emb|CAE58569.1| Hypothetical protein CBG01734 [Caenorhabditis briggsae], gi|187037983|em...
250.0 [0..7] [368..8]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGKSEQLP EEFCFQKNIR NLRSMRLCAD EYRLSLIIVF IILFFGAYFL YQVQYKTGID  60
   61 LIPLFPIDDS GF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENYNEQLLGS VKVSESARNQ AKSGSLLCWA MTTSIYHKTR VPAITETWLR RCDAGHLFTN  60
   61 SDRFLNASTP YHTVFDGLPE SYYKLFWKTR LALLYIYKYV SKDFDWYFKG DDDTYLIVEN 120
  121 LQRYLATLDP NKPYFIGYRL SRRTETGYNA GGSGYVMSRE AMRIFAEKLF NDKQKCPYHE 180
  181 WEDYAIAQCL ASVGIVPLDS RDEKGRQRFL PWRPEQHFYA DLTRSFQMDP IQVWGPAIYH 240
  241 ENLISMHHLH PDEIRLIDGL LYSIARGIWR QDDLEDVRNE TTTVSTSMDD TLPPPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle