YRC Public Data Repository - Protein Structure Prediction

Protein:	CE17231
Organism:	Caenorhabditis elegans
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17231.

Description	E-value	Query Range	Subject Range
GPX6_ARATH - Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana ...	169.0	[0..2]	[187..44]
gi\|92894223 - gi\|92894223\|gb\|ABE92133.1\| Glutathione peroxidase [Medicago truncatula]	169.0	[0..3]	[188..84]
gi\|48374968, gi\|... - gi\|48374968\|gb\|AAT42166.1\| putative glutathione peroxidase [Sorghum bicolor], gi\|242073970\|ref\|XP_00...	169.0	[0..22]	[188..1]
gi\|44663004 - gi\|44663004\|gb\|AAS47590.1\| phospholipid-hydroperoxide glutathione peroxidase [Setaria italica]	167.0	[0..22]	[188..1]
gi\|21360380 - gi\|21360380\|gb\|AAM47493.1\| glutathione peroxidase 1 [Oryza sativa] gi\|115459848, gi... - gi\|222629338\|gb\|EEE61470.1\| hypothetical protein OsJ_15735 [Oryza sativa Japonica Group], gi\|2156930...	167.0	[0..22]	[188..1]
gi\|194703274, gi... - gi\|48374955\|gb\|AAT42154.1\| putative glutathione peroxidase [Zea mays], gi\|226501294\|ref\|NP_001141210...	167.0	[0..22]	[188..1]
GPX4_MESCR - Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC...	167.0	[0..21]	[188..2]
gi\|27544804 - gi\|27544804\|dbj\|BAC55016.1\| phospholipid hydroperoxide glutathione peroxidase-like protein [Hordeum ...	165.0	[0..31]	[188..11]
gi\|34334012 - gi\|34334012\|gb\|AAQ64633.1\| cytosolic glutathione peroxidase [Triticum monococcum]	165.0	[0..22]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGRSLIFSI LFVFSELKCD DTDENDQHGT IYQFQAKNID GKMVSMEKYR DKVVLFTNVA  60
   61 SYCGYTDSNY NAFKELDGIY REKGFRVAAF PCNQFEKQEP ETEGKILDFV KSSYTYAPDM 120
  121 YSKIEVNGQN THPLWKFLKK ERGSSLSADI PWNFSKFLVD KNGHVVGRYS HSVNPIDLEE 180
  181 EISRLLNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits