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View Structure Prediction Details

Protein: eri-1
Organism: Caenorhabditis elegans
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eri-1.

Description E-value Query
Range
Subject
Range
DPO3_BACCR - DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 ...
gi|229146389, gi... - gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24], gi|2286370...
304.0 [0..7] [440..277]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADEPSPED EKYLESLRDL LKISQEFDAS NAKQNDEPEK TAVEVESAET RTDESEKSID  60
   61 IPREQQLLPS ERVEPLKSMV EPEYVKKVIR QMDTMTAEQL KQALMKIKVS TGGNKKTLRK 120
  121 RVAQYYRKEN ALLNRKMEPN ADKTARFFDY LIAIDFECTC VEIIYDYPHE IIELPAVLID 180
  181 VREMKIISEF RTYVRPVRNP KLSEFCMQFT KIAQETVDAA PYFREALQRL YTWMRKFNLG 240
  241 QKNSRFAFVT DGPHDMWKFM QFQCLLSNIR MPHMFRSFIN IKKTFKEKFN GLIKGNGKSG 300
  301 IENMLERLDL SFVGNKHSGL DDATNIAAIA IQMMKLKIEL RINQKCSYKE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1zbuA
Description: No description for 1zbuA was found.

Predicted Domain #2
Region A:
Residues: [351-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQRSAARKDE ERELEDAANV DLTSVDISRR DFQLWMRRLP LKLSSVTRRE FINEEYLDCD  60
   61 SCDDLTDDKV KHLHSCDIYE IFDEKTSASF TDSKCLIC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle