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View Structure Prediction Details

Protein: CE17141
Organism: Caenorhabditis elegans
Length: 331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17141.

Description E-value Query
Range
Subject
Range
CE15082 - status:Partially_confirmed UniProt:O01625 protein_id:AAB52299.1
421.0 [0..11] [331..54]

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Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRLEGPMR ELLLDISDSE KNWLYYSVVS FFVVSTIGAT ILTMSFLVLS ILLWRHFKSM  60
   61 RFFWFLTQLT TSAFVISAAN LFINIPAALS LFSKEVTQSR MFYFVSYLID FCHYSILFSN 120
  121 LVIAVQRAFV FFLRNLTDRF FESKVIYIWI SSIYIFAFGV EYALMSSNCQ YRFGELARKY 180
  181 QLICETTNYA NVVITMTTPT EVQLMETMLQ IFLPLSILII YIAITVKIIY MKGSTLSKNE 240
  241 TLILKQAIFV FLIFQASSCV FLFAQSVQIT NVGAFLVKRF VNTMEILAGA ATPSFFFFTS 300
  301 KEIRKLVSTR VSAVSSQGPS NIQVRAARTL E

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle