YRC Public Data Repository - Protein Structure Prediction

Protein:	mec-17
Organism:	Caenorhabditis elegans
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mec-17.

Description	E-value	Query Range	Subject Range
gi\|157758065 - gi\|157758065\|ref\|XP_001671376.1\| Hypothetical protein CBG17726 [Caenorhabditis briggsae AF16] gi\|39595058, gi\|... - gi\|39595058\|emb\|CAE70926.1\| Hypothetical protein CBG17726 [Caenorhabditis briggsae], gi\|187025564\|em...	473.0	[0..1]	[262..1]
ATAT_DANRE - Alpha-tubulin N-acetyltransferase 1 OS=Danio rerio GN=atat1 PE=1 SV=1	292.0	[0..1]	[199..1]
CE28508 - status:Confirmed UniProt:Q23192 protein_id:AAA81078.2	288.0	[0..1]	[180..1]
gi\|57209797 - gi\|57209797\|emb\|CAI41875.1\| chromosome 6 open reading frame 134 [Homo sapiens]	281.0	[0..1]	[199..1]
gi\|21040499 - gi\|21040499\|gb\|AAH30669.1\| 2610110G12Rik protein [Mus musculus]	280.0	[0..1]	[199..1]
gi\|55729867 - gi\|55729867\|emb\|CAH91661.1\| hypothetical protein [Pongo abelii] gi\|209863053 - gi\|209863053\|ref\|NP_001129439.1\| chromosome 6 open reading frame 134 homolog [Pongo abelii]	278.0	[0..1]	[199..1]
ATAT_BOVIN - Alpha-tubulin N-acetyltransferase 1 OS=Bos taurus GN=ATAT1 PE=2 SV=1	278.0	[0..1]	[207..1]

Back

Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVDADLRPI LGPQLVRLDP MRVKQLQDPI VYEAIDNLAK LSAHCLQLRT PLTTCEKLIN  60
   61 SDSTLYLSWK YDEEEKVSRL MGFAKVGRKK LFLYDSQMQT YEGEILCLLD FYVHFSCQRQ 120
  121 GVGQQILDYM FSQEHTEPYQ LALDNPSVTL LGFMSQKYGL IKPVWQNTNF VVFEELFLAL 180
  181 SAENGIEKPP PDGWRRPMTP RRLGTGMTDT RWLQHAVSGH QSKGNAMAAP VDADMTPQGA 240
  241 LSNRAHQAKA RKAHILSSKP LW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	2pc1A
Description:	No description for 2pc1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits