YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE17115
Organism: Caenorhabditis elegans
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17115.

Description E-value Query
Range
Subject
Range
gi|185135416, gi... - gi|28436149|gb|AAO42980.1| nucleoside diphosphate kinase [Oncorhynchus mykiss], gi|185135416|ref|NP_...
176.0 [0..1] [115..20]

Back

Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHHLLSQAH LDKEKLVILV KEDEKMNSMH KDKPFFPLLI DYMSSGPVVA MLWEGCDVVK  60
   61 RARVILGEEL EVGEFRSIFY DLVVRDTHKG CHCSDSVASA NREYVLWFEE FKEGTRFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 1nueA
Description: Nucleoside diphosphate kinases
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.01269691988791 bayes_pls_golite062009
transferase activity 0.58286994313426 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.51957177256329 bayes_pls_golite062009
kinase activity 0.50515638540554 bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity 0.46162738119901 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 0.46149212827003 bayes_pls_golite062009
nucleoside diphosphate kinase activity 0.45829857929973 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle