YRC Public Data Repository - Protein Structure Prediction

Protein:	flp-13
Organism:	Caenorhabditis elegans
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-13.

Description	E-value	Query Range	Subject Range
gi\|39593649, gi\|... - gi\|39593649\|emb\|CAE61941.1\| Hypothetical protein CBG05939 [Caenorhabditis briggsae], gi\|187034596\|em... gi\|157756097 - gi\|157756097\|ref\|XP_001670392.1\| Hypothetical protein CBG05939 [Caenorhabditis briggsae AF16]	156.0	[0..1]	[160..1]
FARP_ASCSU - FMRFamide-like neuropeptides OS=Ascaris suum GN=AFP-1 PE=1 SV=1	129.0	[0..2]	[160..1]
gi\|157441 - gi\|157441\|gb\|AAA28537.1\| FMRFamide neuropeptide precursor	120.0	[0..22]	[159..151]
gi\|157445 - gi\|157445\|gb\|AAA28538.1\| FMRFamide-related peptide [Drosophila sp.] gi\|288135 - gi\|288135\|emb\|CAA37389.1\| FMRFamide prohormone gene [Drosophila melanogaster]	118.0	[0..22]	[159..151]
gi\|2664222 - gi\|2664222\|emb\|CAA10949.1\| neuropeptide FMRFamide precursor [Mytilus edulis]	118.0	[0..22]	[159..222]
FMRF_DROVI - FMRFamide-related peptides OS=Drosophila virilis GN=FMRFa PE=1 SV=1	114.0	[0..20]	[160..103]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTSLLTISM FVVAIQAFDS SEIRMLDEQY DTKNPFFQFL ENSKRSDRPT RAMDSPLIRF  60
   61 GKRAADGAPL IRFGRAPEAS PFIRFGKRAA DGAPLIRFGR APEASPFIRF GKRASPSAPL 120
  121 IRFGRSPSAV PLIRFGRSAA APLIRFGRAS SAPLIRFGRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits