YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE17005
Organism: Caenorhabditis elegans
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17005.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
272.0 [0..35] [451..641]

Back

Predicted Domain #1
Region A:
Residues: [1-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMNTLTLNF TVICMDDIVE DFHMFHNSTE THWFERSTEK SLLFSGVAIG GLIGLVPSVP  60
   61 QISSIGLRNT QTISGFISGL GSFLFPLAVS VGFYTSFLCR VLQGIGAAVL FTAVGVVPGV 120
  121 WAPKSEANTF MSILACAFQL SNVICMPVSG LLCESAVGWR SIYYISGAIT FVLYTVFWFT 180
  181 YTDDPKLHRN VSQKELRKIS TGKVEKIKEP VPYFAVSTDP TVIISWISLF GGNMGFYVLC 240
  241 IYGPTYLREV LKFDVKETGF LTALPFILSA IAKFSAGRIS DKLTGLSERA RFVFFASIFQ 300
  301 IGLVAGLVVM AFTTNRVIAQ IAFNFAIVSS GLNIMGVVKF ADLPKNLIFV NLPICQFAGS 360
  361 FREILYKIET LKVRCLQHVH YTLTVMSFTA YASQFLSPTL VSIICPNYTN EQWKTFFLVI 420
  421 SGLIVACNAG FPFLARSDAA GYTKKQEPTV KC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle