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View Structure Prediction Details

Protein: grd-10
Organism: Caenorhabditis elegans
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-10.

Description E-value Query
Range
Subject
Range
grd-5 - status:Confirmed UniProt:O16462 protein_id:AAB65952.1
134.0 [0..1] [102..1]
gi|157760183 - gi|157760183|ref|XP_001672434.1| Hypothetical protein CBG01473 [Caenorhabditis briggsae AF16]
gi|187038201, gi... - gi|39581567|emb|CAE58352.1| Hypothetical protein CBG01473 [Caenorhabditis briggsae], gi|187038201|em...
133.0 [0..1] [102..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLVVLAAL AVTVCFAQDN CYINEGGFTC CNKELESVMK SSLGGSDLVG SAGDIQKGAE  60
   61 GSLGGKFETV VAHDDFAYKS HFQEGKSCKV EKDGQYALAW QP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.12
Match: 1re6A
Description: Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.505766470116817 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle