YRC Public Data Repository - Protein Structure Prediction

Protein:	crn-2
Organism:	Caenorhabditis elegans
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn-2.

Description	E-value	Query Range	Subject Range
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	307.0	[0..5]	[285..1]
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	306.0	[0..5]	[285..1]
gi\|170707566, gi... - gi\|170707566\|ref\|ZP_02898019.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0389], gi\|1... gi\|177655347, gi... - gi\|177655347\|ref\|ZP_02936876.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0174], gi\|1... gi\|190568989, gi... - gi\|190568989\|ref\|ZP_03021890.1\| deoxyribonuclease, TatD family [Bacillus anthracis Tsiankovskii-I], ... gi\|196036356, gi... - gi\|196036356\|ref\|ZP_03103753.1\| deoxyribonuclease, TatD family [Bacillus cereus W], gi\|195990986\|gb\|... gi\|196027406, gi... - gi\|196041786\|ref\|ZP_03109076.1\| deoxyribonuclease, TatD family [Bacillus cereus NVH0597-99], gi\|1960... gi\|218535153, gi... - gi\|218901240\|ref\|YP_002449074.1\| deoxyribonuclease, TatD family [Bacillus cereus AH820], gi\|21853515... gi\|164711717, gi... - gi\|165872589\|ref\|ZP_02217221.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0488], gi\|1... gi\|167635090, gi... - gi\|167635090\|ref\|ZP_02393407.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0442], gi\|1... gi\|167510519, gi... - gi\|167641534\|ref\|ZP_02399782.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0193], gi\|1... gi\|170667141, gi... - gi\|170688917\|ref\|ZP_02880119.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0465], gi\|1... gi\|254762418 - gi\|254762418\|ref\|ZP_05214260.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Aust... gi\|254756362 - gi\|254756362\|ref\|ZP_05208391.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Voll... gi\|254744657 - gi\|254744657\|ref\|ZP_05202336.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Krug... gi\|254733575 - gi\|254733575\|ref\|ZP_05191296.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. West... gi\|254682334 - gi\|254682334\|ref\|ZP_05146195.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. CNEV... gi\|229604431, gi... - gi\|229604431\|ref\|YP_002864690.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0248], gi\|... gi\|229119702, gi... - gi\|229119702\|ref\|ZP_04248964.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus 95/8201], gi... gi\|49477127, gi\|... - gi\|49477127\|ref\|YP_034393.1\| TatD related DNase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|229089171, gi... - gi\|229089171\|ref\|ZP_04220453.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus Rock3-42], g... gi\|228815803, gi... - gi\|228943846\|ref\|ZP_04106232.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228828094, gi... - gi\|228931542\|ref\|ZP_04094449.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228912779, gi... - gi\|228912779\|ref\|ZP_04076427.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|227002938, gi... - gi\|227812712\|ref\|YP_002812721.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. CDC 684], g... gi\|49177000, gi\|... - gi\|49183073\|ref\|YP_026325.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Sterne], gi\|4917... gi\|47500440, gi\|... - gi\|47525292\|ref\|YP_016641.1\| TatD family deoxyribonuclease [Bacillus anthracis str. 'Ames Ancestor']... gi\|30253550, gi\|... - gi\|30260229\|ref\|NP_842606.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Ames], gi\|302535... gi\|21398002, gi\|... - gi\|65317499\|ref\|ZP_00390458.1\| COG0084: Mg-dependent DNase [Bacillus anthracis str. A2012], ref\|NP_6...	303.0	[0..5]	[286..1]
gi\|217066631, gi... - gi\|217957615\|ref\|YP_002336157.1\| deoxyribonuclease, TatD family [Bacillus cereus AH187], gi\|21706663... gi\|229136886, gi... - gi\|229136886\|ref\|ZP_04265514.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST26], ... gi\|222093809, gi... - gi\|222093809\|ref\|YP_002527858.1\| TatD related DNase [Bacillus cereus Q1], gi\|221237856\|gb\|ACM10566.1... gi\|228983295, gi... - gi\|228983295\|ref\|ZP_04143509.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|206743852, gi... - gi\|206977946\|ref\|ZP_03238833.1\| deoxyribonuclease, TatD family [Bacillus cereus H3081.97], gi\|206743... gi\|228629622, gi... - gi\|229153818\|ref\|ZP_04281949.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus ATCC 4342], ... gi\|47569888, gi\|... - gi\|47569888\|ref\|ZP_00240555.1\| sec-independent secretion protein tatD [Bacillus cereus G9241], gi\|47...	301.0	[0..5]	[286..1]
gi\|89207208, gi\|... - gi\|89207208\|ref\|ZP_01185754.1\| TatD-related deoxyribonuclease [Bacillus weihenstephanensis KBAB4], g... gi\|229131047, gi... - gi\|229131047\|ref\|ZP_04259960.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST196],... gi\|228751693, gi... - gi\|229009549\|ref\|ZP_04166776.1\| Uncharacterized deoxyribonuclease yabD [Bacillus mycoides DSM 2048],... gi\|229165028, gi... - gi\|229165028\|ref\|ZP_04292824.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus AH621], gi\|2...	300.0	[0..5]	[286..1]
gi\|52145176, gi\|... - gi\|52145176\|ref\|YP_081652.1\| TatD related DNase [Bacillus cereus E33L], gi\|51978645\|gb\|AAU20195.1\| T...	300.0	[0..5]	[286..1]
gi\|42735033, gi\|... - gi\|42779118\|ref\|NP_976365.1\| TatD family deoxyribonuclease [Bacillus cereus ATCC 10987], gi\|42735033...	300.0	[0..5]	[286..1]
gi\|218542555, gi... - gi\|218895175\|ref\|YP_002443586.1\| deoxyribonuclease, TatD family [Bacillus cereus G9842], gi\|21854255... gi\|75759601, gi\|... - gi\|75759601\|ref\|ZP_00739687.1\| DNase, TatD family [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228796523, gi... - gi\|228963138\|ref\|ZP_04124308.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228898793, gi... - gi\|228898793\|ref\|ZP_04063076.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis IBL 4...	299.0	[0..5]	[286..1]
gi\|56378409, gi\|... - gi\|56418567\|ref\|YP_145885.1\| deoxyribonuclease [Geobacillus kaustophilus HTA426], gi\|56378409\|dbj\|BA...	299.0	[0..5]	[286..1]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	299.0	[0..5]	[285..1]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYELVDIG ANLGHPSYQK DLNDVLDRAK QAGLSKIMVT GTSEKISHEC ADLVEKYPGF  60
   61 LYFTAGVHPH DAKDWNDGTL EALKKLQENP SCVAVGECGL DFNRNFSPQD VQKEVFAKQV 120
  121 DMAVKLQKPL FIHEREAHED MVKILTAAGP SLPPAVIHCF TGTVVEAKKY LEMGFYIGLT 180
  181 GFLWKDRSDN GVQAGLRSGE IPIEKLVLET DAPYMYPKIN DKKIPKEIKS LITPETEALH 240
  241 NFSSFNRNEP CSLAAVCELV AAFAGRDPKE VAKITTENAK KVYKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.39794
Match:	2gzxA
Description:	No description for 2gzxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits