YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16903
Organism:	Caenorhabditis elegans
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16903.

Description	E-value	Query Range	Subject Range
gi\|76792570, gi\|... - gi\|76792570\|ref\|ZP_00775068.1\| Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allerg...	133.0	[0..2]	[150..6]
gi\|89158835, gi\|... - gi\|89211558\|ref\|ZP_01189917.1\| thiol:disulfide interchange protein (thioredoxin) [Halothermothrix or...	133.0	[0..5]	[140..44]
gi\|115973522, gi... - gi\|115973522\|ref\|XP_001191584.1\| PREDICTED: similar to mitochondrial truncated thioredoxin-dependent...	133.0	[0..3]	[150..76]
gi\|116130529, gi... - gi\|119113794\|ref\|XP_310704.3\| thioredoxin-dependent peroxidase (AGAP000396-PA) [Anopheles gambiae st... AGAP000396-PA - TPX1: thioredoxin peroxidase 1\|protein_coding\|X:7240025:7240911:1\|gene:AGAP000396	133.0	[0..3]	[151..44]
gi\|88787696, gi\|... - gi\|88808708\|ref\|ZP_01124218.1\| thioredoxin peroxidase [Synechococcus sp. WH 7805], gi\|88787696\|gb\|EA...	133.0	[0..5]	[151..13]
gi\|67083289 - gi\|67083289\|gb\|AAY66580.1\| thioredoxin peroxidase [Ixodes scapularis]	133.0	[0..2]	[150..60]
gi\|50897513 - gi\|50897513\|gb\|AAT85819.1\| putative thioredoxin peroxidase 3 [Glossina morsitans morsitans]	133.0	[0..3]	[151..46]
gi\|119634114, gi... - gi\|90573252\|ref\|ZP_01229768.1\| hypothetical protein CdifQ_02003277 [Clostridium difficile QCD-32g58]... gi\|255518355 - gi\|255518355\|ref\|ZP_05386031.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|255651473 - gi\|255651473\|ref\|ZP_05398375.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|254976558 - gi\|254976558\|ref\|ZP_05273030.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|255093942 - gi\|255093942\|ref\|ZP_05323420.1\| putative cytochrome C biogenesis protein [Clostridium difficile CIP ... gi\|255315694 - gi\|255315694\|ref\|ZP_05357277.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-...	133.0	[0..7]	[139..287]
gi\|78184723, gi\|... - gi\|78184723\|ref\|YP_377158.1\| thioredoxin peroxidase [Synechococcus sp. CC9902], gi\|78169017\|gb\|ABB26...	132.0	[0..3]	[151..14]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLFAGKPL INQEGKELDG GDALRGKKVV ALYFSAMWCG SCRQFTPKLK RFYEALKAAG  60
   61 KEIEVVLVSR DREAEDLLEY LGHGGDWVAI PFGDERIQEY LKKYEVPTIP AFKLINNAGE 120
  121 LLHDARADVT ERGKDDAVAL FDEWVEKFPA N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1qq2A
Description:	Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits