YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16898
Organism:	Caenorhabditis elegans
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16898.

Description	E-value	Query Range	Subject Range
SPCS1_CAEBR - Probable signal peptidase complex subunit 1 OS=Caenorhabditis briggsae GN=CBG12804 PE=3 SV=1 gi\|157747811 - gi\|157747811\|ref\|XP_001669000.1\| Hypothetical protein CBG12804 [Caenorhabditis briggsae AF16]	152.0	[0..1]	[94..1]
gi\|109039192 - gi\|109039192\|ref\|XP_001085058.1\| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...	151.0	[0..6]	[105..284]
SPCS1_PONAB - Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1 SPCS1 - signal peptidase complex subunit 1 homolog (S. cerevisiae) ENSPTRT00000028110 - null SPCS1_PONPY - Signal peptidase complex subunit 1 - Pongo pygmaeus (Orangutan)	144.0	[0..12]	[105..5]
gi\|73985289, gi\|... - gi\|73985289\|ref\|XP_858931.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	141.0	[0..12]	[105..5]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	141.0	[0..12]	[105..5]
SP12_MOUSE, SPCS... - Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=2, (Q9D958) Microsomal signal pe...	139.0	[0..12]	[105..5]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMIAMLPA PLQKLSSHID FQGQKVAERT YQVILTIAGI IGFLVGFWTQ QLSYAMFTVL  60
   61 GASAFTALII LPPWPFLFRK NPIVWHTPAE PQESGDKKKE TKKTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.886057
Match:	PF06645.4
Description:	No description for PF06645.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits