YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16896
Organism:	Caenorhabditis elegans
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16896.

Description	E-value	Query Range	Subject Range
gi\|157747815 - gi\|157747815\|ref\|XP_001669002.1\| Hypothetical protein CBG12806 [Caenorhabditis briggsae AF16] gi\|187029384, gi... - gi\|39595840\|emb\|CAE67343.1\| Hypothetical protein CBG12806 [Caenorhabditis briggsae], gi\|187029384\|em...	254.0	[0..1]	[171..1]
gi\|12005918, gi\|... - gi\|21361822\|ref\|NP_057049.3\| cell death-regulatory protein GRIM19 [Homo sapiens], gi\|12005918\|gb\|AAG...	201.0	[0..3]	[132..85]
gi\|111662445 - gi\|111662445\|gb\|ABH12254.1\| mitochondrial complex I subunit Grim19 [Gorilla gorilla] NDUAD_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 ...	196.0	[0..3]	[132..2]
NDUAD_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=...	194.0	[0..3]	[132..2]
NDUAD_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3	194.0	[0..3]	[139..2]
NDUAD_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3 NDUAD_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo abelii GN=NDUFA13 PE=2 SV=3	193.0	[0..3]	[132..2]
NDUAD_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3	191.0	[0..3]	[132..2]
gi\|57101296 - gi\|57101296\|ref\|XP_533863.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase B16.6 subunit (Com...	191.0	[0..3]	[132..2]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGAEFRQD MPPKGGYRAF NFHRTFPKLV WSPGTVVAAI FGATAYGVYA ALEGKKKDIT  60
   61 EKFEDVDINN AMEPFLTAER DRYWLKLLAK NRALEEEIMK DVPGWKTGTW YGEPVYFTLG 120
  121 DKWWDPTATE VFVHSRGSNE TRDHLWRQHS EYAGPKFYDN WFPQWMSKWF W

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.167491
Match:	PF06212.3
Description:	No description for PF06212.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.316	N/A	N/A	a.7.8	GAT domain
View	Download	0.256	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.233	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.219	N/A	N/A	d.228.1	Replication modulator SeqA, C-terminal DNA-binding domain
View	Download	0.206	N/A	N/A	a.118.1	ARM repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits