YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16893
Organism:	Caenorhabditis elegans
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16893.

Description	E-value	Query Range	Subject Range
gi\|48892684, gi\|... - gi\|71675161\|ref\|ZP_00672907.1\| Peptidase S1, chymotrypsin:TPR repeat [Trichodesmium erythraeum IMS10...	159.0	[0..3]	[206..309]
gi\|160879503, gi... - gi\|160879503\|ref\|YP_001558471.1\| beta-lactamase domain-containing protein [Clostridium phytofermenta...	155.0	[0..2]	[206..28]
gi\|46119331, gi\|... - gi\|67923599\|ref\|ZP_00517071.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854569\|gb...	154.0	[0..3]	[206..209]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	153.0	[0..3]	[205..85]
gi\|40063717 - gi\|40063717\|gb\|AAR38498.1\| TPR repeat protein [uncultured marine bacterium 583]	151.0	[0..2]	[206..61]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	151.0	[0..3]	[205..84]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	150.0	[0..3]	[206..60]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	150.0	[0..3]	[206..378]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIEEIFED EEDQITKVDS LKKEGNNFFA NGEFEKANEK YQEAIASCPP TSTEVQSILL  60
   61 SNSAAALIKL RKWESAVEAA SKSIEIGATN EKALERRAFA YSNMSEKYEN SIEDYKQLQE 120
  121 SLPKRRVELD RKIAEINEKI NNRNEAMKAD VMEKLKGFGN FCLSPFGLST DSFEMVPNGN 180
  181 GGFSVQMKGA TNKQEGASQE KKEEENA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.02652482814057	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: