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View Structure Prediction Details

Protein: kbp-5
Organism: Caenorhabditis elegans
Length: 135 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kbp-5.

Description E-value Query
Range
Subject
Range
gi|157747817 - gi|157747817|ref|XP_001669003.1| Hypothetical protein CBG12807 [Caenorhabditis briggsae AF16]
gi|187029385, gi... - gi|39595841|emb|CAE67344.1| Hypothetical protein CBG12807 [Caenorhabditis briggsae], gi|187029385|em...
157.0 [0..1] [130..1]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPNHNEGLL ELYTQAISLE ALKDAEQFLE NSLLGKDAQV ERLLAQVLIE EQQIETNRKK  60
   61 IAQLRIEKEE LEFDCANSDL KSLEQMQAER DELQRKCQPG QHTKSNHKSS EQLLRMKKET 120
  121 DALRAYMKKI SQFED

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.46
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle