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View Structure Prediction Details

Protein: CE16864
Organism: Caenorhabditis elegans
Length: 374 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16864.

Description E-value Query
Range
Subject
Range
gi|9507011, gi|2... - gi|9507011|ref|NP_062013.1| protein tyrosine phosphatase, receptor type, S [Rattus norvegicus], gi|2...
349.0 [0..18] [373..1240]

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Predicted Domain #1
Region A:
Residues: [1-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMFKKRTVR KGKKGNTKTE NERGPKKDKG GKTIVDEDIA TTITAPPPNA SQQPQLVQAH  60
   61 PIVEQFVQRA LDYGVEKLRD EFRQMAKYTR PDMTQNAFNA NQSANINETK NRYADVPCQD 120
  121 QNIVLVAKPP APSDYVHANF VGCPMVPDKR FICTQGPLDH TVDDFWWMIV QQKVEQIVML 180
  181 CKTIETGKYK CAQYWPLAMG EKKEVKGGIV VENVSGTKPM DRDAEIQITT LQVSFGDQKM 240
  241 SVRHLHWSDW PDRGVPPCKL TSLELLSAVR GSRVPIVVHC SAGIGRTGTI VAIEYILERI 300
  301 AENKQCPPMP DLVKSLRDQR AYSIQTDMQY LYIHRVMLNY FLEKYKDKYA ALLNPDNVAK 360
  361 YTKFVKDYNF ATGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.522879
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle