YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE16630
Organism: Caenorhabditis elegans
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16630.

Description E-value Query
Range
Subject
Range
gi|39583267, gi|... - gi|39583267|emb|CAE60059.1| Hypothetical protein CBG03574 [Caenorhabditis briggsae], gi|187036463|em...
532.0 [0..1] [595..1]

Back

Predicted Domain #1
Region A:
Residues: [1-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGCAKLDK QVADWLAWDK NDKNRNEIQK LVDEKNVDAL KARMDTRLVF GTAGVRSPMQ  60
   61 AGFGRLNDLT IIQITHGFAR HMLNVYGQPK NGVAIGFDGR YNSRRFAELS ANVFVRNNIP 120
  121 VYLFSEVSPT PVVSWATIKL GCDAGLIITA SHNPKEDNGY KAYWSNGAQI IGPHDTEIVR 180
  181 IKEAEPQPRD EYWDLSELKS SPLFHSADVV IDPYFEVEKS LNFTREINGS TPLKFTYSAF 240
  241 HGIGYHYTKR MFAEFGFPAS SFISVAEQQD PNPDFPTIPF PNPEEGRKVL TLAMETADKN 300
  301 GSTVILANDP DADRIQMAEK QKDGEWRVFT GNEMGALITW WIWTNWRKAN PNADASKVYI 360
  361 LNSAVSSQIV KTIADAEGFK NETTLTGFKW MGNRAEELRA DGNQVILAWE ESIGYMPGHT 420
  421 MDKDGVSAAA VFAEIAAFLH AEGKSLQDQL YALYNRYGFH LVRSTYWMVP APEVTKKLFS 480
  481 TLRADLKFPT KIGEAEVASV RDLTIGYDNS KPDNKPVLPL STSSEMVTFF LKTGSVTTLR 540
  541 ASGTEPKIKY YIELITAPGK TQNDLESVIS EMDQLEKDVV ATLLRPQQFG LIPRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 1c47A
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
intramolecular transferase activity, phosphotransferases 2.81013216982616 bayes_pls_golite062009
phosphoglucomutase activity 2.69310705391365 bayes_pls_golite062009
isomerase activity 2.10512181960585 bayes_pls_golite062009
catalytic activity 1.90838528948382 bayes_pls_golite062009
binding 1.61980820714401 bayes_pls_golite062009
intramolecular transferase activity 1.30184724715376 bayes_pls_golite062009
phosphomannomutase activity 0.96914970670646 bayes_pls_golite062009
protein binding 0.259532204752794 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle