YRC Public Data Repository - Protein Structure Prediction

Protein:	ric-4
Organism:	Caenorhabditis elegans
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ric-4.

Description	E-value	Query Range	Subject Range
gi\|39593308, gi\|... - gi\|39593308\|emb\|CAE64778.1\| Hypothetical protein CBG09569 [Caenorhabditis briggsae], gi\|187031738\|em... gi\|157763374 - gi\|157763374\|ref\|XP_001674029.1\| Hypothetical protein CBG09569 [Caenorhabditis briggsae AF16]	215.0	[0..1]	[234..1]
gi\|481203 - gi\|481203\|pir\|\|S38309 SNAP-25 protein - chicken	189.0	[0..31]	[213..4]
gi\|50841439 - gi\|50841439\|gb\|AAT84082.1\| synaptosomal-associated protein [Carassius auratus]	177.0	[0..65]	[233..1]
ric-4 - SNAP-25 family status:Confirmed UniProt:O62414 protein_id:CAA16322.2	175.0	[0..29]	[234..2]
gi\|56753369 - gi\|56753369\|gb\|AAW24888.1\| SJCHGC02886 protein [Schistosoma japonicum]	169.0	[0..28]	[234..3]
gi\|27448107, gi\|... - gi\|27448107\|gb\|AAO13788.1\|AF335586_1 SNAP25a [Xenopus laevis], gi\|148232204\|ref\|NP_001083880.1\| SNAP...	168.0	[0..31]	[233..4]
gi\|29378329 - gi\|29378329\|gb\|AAO83846.1\|AF484089_1 synaptosomal-associated 25 protein isoform A [Lymnaea stagnalis...	167.0	[0..41]	[234..24]
gi\|55731614 - gi\|55731614\|emb\|CAH92513.1\| hypothetical protein [Pongo abelii] gi\|55731614\|emb\|... - hypothetical protein [Pongo pygmaeus]	167.0	[0..31]	[233..4]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARRGAPGG QRHPRPYAVE PTVDINGLVL PADMSDELKG LNVGIDEKTI ESLESTRRML  60
   61 ALCEESKEAG IKTLVMLDDQ GEQLERCEGA LDTINQDMKE AEDHLKGMEK CCGLCVLPW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1l4aC
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKTDDFEKTE FAKAWKKDDD GGVISDQPRI TVGDSSMGPQ GGYITKITND AREDEMDENV  60
   61 QQVSTMVGNL RNMAIDMSTE VSNQNRQLDR IHDKAQSNEV RVESANKRAK NLITK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1sfcD
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits