YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16538
Organism:	Caenorhabditis elegans
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16538.

Description	E-value	Query Range	Subject Range
gi\|114553916, gi... - gi\|114553918\|ref\|XP_001136533.1\| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes], gi\|114...	149.0	[0..2]	[112..352]
EXOSC10 - exosome component 10 gi\|190691893, gi... - gi\|190691893\|gb\|ACE87721.1\| exosome component 10 protein [synthetic construct], gi\|190690525\|gb\|ACE8...	149.0	[0..2]	[112..352]
gi\|108997023, gi... - gi\|108997029\|ref\|XP_001103741.1\| PREDICTED: similar to exosome component 10 isoform 1 isoform 4 [Mac...	149.0	[0..2]	[112..352]
gi\|115653109, gi... - gi\|115960717\|ref\|XP_001189337.1\| PREDICTED: similar to exosome component 10 [Strongylocentrotus purp...	149.0	[0..1]	[129..327]
gi\|20071218 - gi\|20071218\|gb\|AAH27326.1\| Exosome component 10 [Mus musculus]	148.0	[0..2]	[112..352]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSASVKKLK NFLRKLSYQR DMVSYGKEDF LADIEHKDMQ SKFVRTNGTR SLLSLKAEAT  60
   61 YWTGLDLHKG ETMSDWTNTH LRGDQLRYAI MDTIVMHLII KQRLRNIHKN DPRLFQYVFE 120
  121 NGHPLPYNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	2hbjA
Description:	No description for 2hbjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits