YRC Public Data Repository - Protein Structure Prediction

Protein:	jun-1
Organism:	Caenorhabditis elegans
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jun-1.

Description	E-value	Query Range	Subject Range
gi\|26353686 - gi\|26353686\|dbj\|BAC40473.1\| unnamed protein product [Mus musculus]	98.0	[0..2]	[94..243]
gi\|56910, gi\|112430 - gi\|56910\|emb\|CAA38500.1\| Jun B protein [Rattus norvegicus], pir\|\|S21063 transforming protein (jun-B)...	98.0	[0..2]	[94..243]
gi\|29823878 - gi\|29823878\|emb\|CAD56858.1\| JunB protein [Takifugu rubripes]	96.0	[0..9]	[94..235]
gi\|47220266 - gi\|47220266\|emb\|CAG03300.1\| unnamed protein product [Tetraodon nigroviridis]	96.0	[0..9]	[94..236]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWSSETFGM TPEEQIEWMA LDDQEKKKLE RKRARNRQAA TKCRQKKMDR IKELEEQVLH  60
   61 EKHRGQRLDA ELLELNRALE HFRRTVEHHS GNGCPNNSIR V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.045757
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits