YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16454
Organism:	Caenorhabditis elegans
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16454.

Description	E-value	Query Range	Subject Range
gi\|90579276, gi\|... - gi\|90579276\|ref\|ZP_01235086.1\| putative ATP-dependent protease LA [Vibrio angustum S14], gi\|90440109...	158.0	[0..2]	[119..609]
gi\|89073232, gi\|... - gi\|89073232\|ref\|ZP_01159762.1\| putative ATP-dependent protease LA [Photobacterium sp. SKA34], gi\|890...	158.0	[0..2]	[119..609]
gi\|86159769, gi\|... - gi\|86159769\|ref\|YP_466554.1\| Lon-A peptidase [Anaeromyxobacter dehalogenans 2CP-C], gi\|85776280\|gb\|A...	158.0	[0..2]	[119..622]
gi\|229348011, gi... - gi\|229515306\|ref\|ZP_04404766.1\| ATP-dependent protease La Type I [Vibrio cholerae TMA 21], gi\|229348... gi\|229351744, gi... - gi\|229511779\|ref\|ZP_04401258.1\| ATP-dependent protease La Type I [Vibrio cholerae B33], gi\|229351744... gi\|229355489, gi... - gi\|229507984\|ref\|ZP_04397489.1\| ATP-dependent protease La Type I [Vibrio cholerae BX 330286], gi\|229... gi\|227082050, gi... - gi\|227082050\|ref\|YP_002810601.1\| ATP-dependent protease LA [Vibrio cholerae M66-2], gi\|227009938\|gb\|... gi\|227013818, gi... - gi\|75827242\|ref\|ZP_00756677.1\| COG0466: ATP-dependent Lon protease, bacterial type [Vibrio cholerae ... gi\|121629889, gi... - gi\|75814905\|ref\|ZP_00745446.1\| COG0466: ATP-dependent Lon protease, bacterial type [Vibrio cholerae ... gi\|9656455, gi\|1... - gi\|9656455\|gb\|AAF95068.1\| ATP-dependent protease LA [Vibrio cholerae O1 biovar El Tor str. N16961], ... gi\|11265368 - pir\|\|G82141 ATP-dependent LA proteinase VC1920 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|254849008, gi... - gi\|254849008\|ref\|ZP_05238358.1\| ATP-dependent protease LA [Vibrio cholerae MO10], gi\|254844713\|gb\|EE... gi\|229370185, gi... - gi\|229607530\|ref\|YP_002878178.1\| ATP-dependent protease La Type I [Vibrio cholerae MJ-1236], gi\|2293... gi\|229529054, gi... - gi\|229529054\|ref\|ZP_04418444.1\| ATP-dependent protease La Type I [Vibrio cholerae 12129(1)], gi\|2293... gi\|229523940, gi... - gi\|229523940\|ref\|ZP_04413345.1\| ATP-dependent protease La Type I [Vibrio cholerae bv. albensis VL426... gi\|229518916, gi... - gi\|229518916\|ref\|ZP_04408359.1\| ATP-dependent protease La Type I [Vibrio cholerae RC9], gi\|229343605...	156.0	[0..2]	[119..609]
gi\|17428730 - gi\|17428730\|emb\|CAD15415.1\| probable atp-dependent protease la protein [Ralstonia solanacearum GMI10... gi\|17546432 - gi\|17546432\|ref\|NP_519834.1\| ATP-dependent protease LA protein [Ralstonia solanacearum GMI1000]	155.0	[0..2]	[119..613]
gi\|37198033, gi\|... - gi\|37679290\|ref\|NP_933899.1\| ATP-dependent Lon protease [Vibrio vulnificus YJ016], gi\|37198033\|dbj\|B...	155.0	[0..2]	[119..609]
gi\|207743052, gi... - gi\|207743052\|ref\|YP_002259444.1\| atp-dependent protease la protein [Ralstonia solanacearum IPO1609],... gi\|207723584, gi... - gi\|207723584\|ref\|YP_002253983.1\| atp-dependent protease la protein [Ralstonia solanacearum MolK2], g... gi\|83745915, gi\|... - gi\|83745915\|ref\|ZP_00942972.1\| ATP-dependent protease LA [Ralstonia solanacearum UW551], gi\|83727605...	155.0	[0..2]	[119..613]
gi\|82743711, gi\|... - gi\|82743711\|ref\|ZP_00906340.1\| Peptidase S16, ATP-dependent protease La [Shewanella sp. W3-18-1], gi...	155.0	[0..2]	[119..388]
gi\|78504307, gi\|... - gi\|78687934\|ref\|ZP_00852665.1\| Peptidase S16, ATP-dependent protease La [Shewanella sp. ANA-3], gi\|7...	155.0	[0..2]	[119..436]
SO1796 - ATP-dependent protease La gi\|24373362, gi\|... - gi\|24373362\|ref\|NP_717405.1\| ATP-dependent protease La [Shewanella oneidensis MR-1], gi\|24347625\|gb\|...	155.0	[0..2]	[119..610]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIYVSACRH AVCSETVLDV LGNVSEKMKK GIELARSVAH LELCQDKITF QRRYVAIEFD  60
   61 EDELLDGKSS ILAVAVSIYF AIVGLRVPSD LMITGSLNLK GTVIPISGLD KTVKVIKLRI 120
  121 TLSGSSSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1rr9A
Description:	Catalytic domain of E.coli Lon protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.348396152404562	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: