YRC Public Data Repository - Protein Structure Prediction

Protein:	taf-9
Organism:	Caenorhabditis elegans
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf-9.

Description	E-value	Query Range	Subject Range
gi\|74199912, gi\|... - gi\|74199912\|dbj\|BAE20773.1\| unnamed protein product [Mus musculus], gi\|123230055\|emb\|CAM23482.1\| TAF...	249.0	[0..3]	[177..40]
gi\|157775573 - gi\|157775573\|ref\|XP_001665852.1\| hypothetical protein CBG18251 [Caenorhabditis briggsae AF16] gi\|39591770, gi\|... - gi\|39591770\|emb\|CAE71348.1\| Hypothetical protein CBG18251 [Caenorhabditis briggsae], gi\|187025265\|em...	243.0	[0..1]	[183..1]
gi\|114689249 - gi\|114689249\|ref\|XP_529052.2\| PREDICTED: transcription associated factor 9B [Pan troglodytes]	236.0	[0..8]	[177..1]
TAF9B_PONPY - Transcription initiation factor TFIID subunit 9B - Pongo pygmaeus (Orangutan) gi\|123996879, gi... - gi\|123996879\|gb\|ABM86041.1\| TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated facto... TAF9B - TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa TAF9B_PONAB - Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1	236.0	[0..8]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTGEKDTE TTASGTDGHS KEALAVISML HECGIQEFDP RVVSMLMDVQ YAVTSKILQM  60
   61 SSGLSRHAEK AQIEAEDVQT AADMLGVLTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [91-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAPDREKILQ LANDKNQQPL PQIRHNYGLK LPNDRFCQLQ QNFVYKADDS YQPMEMQQVT  60
   61 HQPHIIEPPT QVLRPEHVQN MLKRRAPDDD FDS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.223	d.28.1	Ribosomal protein S19
View	Download	0.215	a.1.1	Globin-like
View	Download	0.211	c.114.1	YchN-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits