YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16380
Organism:	Caenorhabditis elegans
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16380.

Description	E-value	Query Range	Subject Range
gi\|71020741, gi\|... - gi\|71020741\|ref\|XP_760601.1\| hypothetical protein UM04454.1 [Ustilago maydis 521], ref\|XP_402069.1\| ...	188.0	[0..1]	[230..62]
tr\|G3HSN1\|G3HSN1... - Protein CWC15-like OS=Cricetulus griseus GN=H671_4g13327 PE=4 SV=1 CWC15_RAT - Spliceosome-associated protein CWC15 homolog OS=Rattus norvegicus GN=Cwc15 PE=1 SV=1	185.0	[0..1]	[230..1]
gi\|50731151 - gi\|50731151\|ref\|XP_417190.1\| PREDICTED: similar to hypothetical protein [Gallus gallus]	185.0	[0..1]	[230..26]
CWC15_MOUSE - Spliceosome-associated protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=1 SV=1	185.0	[0..1]	[230..1]
ENSCJAT00000008051 - null tr\|G1SFT2\|G1SFT2... - pep:novel chromosome:oryCun2:1:121904811:121918604:1 gene:ENSOCUG00000001629 transcript:ENSOCUT00000... gi\|109108351 - gi\|109108351\|ref\|XP_001089958.1\| PREDICTED: similar to RIKEN cDNA 0610040D20 [Macaca mulatta] gi\|114639892, gi... - gi\|55636843\|ref\|XP_508705.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146398... CWC15_PONAB - Spliceosome-associated protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=2 SV=1 CWC15_PONPY - Protein CWC15 homolog - Pongo pygmaeus (Orangutan) CWC15 - CWC15 spliceosome-associated protein homolog (S. cerevisiae)	184.0	[0..1]	[230..1]
tr\|M3W8G5\|M3W8G5... - Uncharacterized protein OS=Felis catus GN=CWC15 PE=4 SV=1 CWC15_BOVIN - Spliceosome-associated protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 SV=1 gi\|57102290 - gi\|57102290\|ref\|XP_533974.1\| PREDICTED: similar to RIKEN cDNA 0610040D20 [Canis familiaris]	183.0	[0..1]	[230..1]
gi\|6841518, gi\|7... - gi\|7705475\|ref\|NP_057487.1\| hypothetical protein LOC51503 [Homo sapiens], gi\|6841518\|gb\|AAF29112.1\|A...	181.0	[0..1]	[230..1]
CW15A_XENLA - Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1	179.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAHRPTFH PARGGTARGE GDLSKLSNQY SSKDMPSHTK MKYRQTGQET EADLRKKDLR  60
   61 RELEDKERNA IREKRARDSA SSSSSHSKRQ RMDQIAAESA ASVDADEAVD ELNSSDDDDS 120
  121 DEDDTAALMA ELEKIKKERA EEKAARDEEI KEKEEKQRME NILAGNPLLN DTPAGSSTSG 180
  181 GDFTVKRRWD DDVVFKNCAK GVEERKKEVT FINDAIRSEF HKKFMDKYIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits