YRC Public Data Repository - Protein Structure Prediction

Protein:	mag-1
Organism:	Caenorhabditis elegans
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mag-1.

Description	E-value	Query Range	Subject Range
gi\|109472730, gi... - gi\|109474348\|ref\|XP_001069775.1\| PREDICTED: similar to mago-nashi homolog [Rattus norvegicus], gi\|10...	303.0	[0..8]	[152..60]
gi\|218186682 - gi\|218186682\|gb\|EEC69109.1\| hypothetical protein OsI_38020 [Oryza sativa Indica Group] MGN_ORYSJ - Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2 MGN_ORYSA - Protein mago nashi homolog (Mago nashi-like protein) - Oryza sativa (Rice)	302.0	[0..10]	[152..16]
gi\|187024773, gi... - gi\|39580206\|emb\|CAE71713.1\| Hypothetical protein CBG18690 [Caenorhabditis briggsae], gi\|187024773\|em... gi\|157748311 - gi\|157748311\|ref\|XP_001669250.1\| Hypothetical protein CBG18690 [Caenorhabditis briggsae AF16]	299.0	[0..1]	[152..1]
MAGOHB - mago-nashi homolog B (Drosophila)	293.0	[0..8]	[152..4]
gi\|57106514, gi\|... - gi\|73958681\|ref\|XP_850352.1\| PREDICTED: similar to mago-nashi homolog [Canis familiaris], gi\|5710651... MGN2_BOVIN - Protein mago nashi homolog 2 OS=Bos taurus GN=MAGOHB PE=2 SV=1 gi\|149713919 - gi\|149713919\|ref\|XP_001500370.1\| PREDICTED: similar to Mago-nashi homolog 2 [Equus caballus] gi\|109095628 - gi\|109095628\|ref\|XP_001115410.1\| PREDICTED: similar to mago-nashi homolog isoform 2 [Macaca mulatta] gi\|114643564 - gi\|114643564\|ref\|XP_520743.2\| PREDICTED: hypothetical protein [Pan troglodytes]	293.0	[0..8]	[152..4]
gi\|108872119, gi... - gi\|157129592\|ref\|XP_001655409.1\| mago nashi, putative [Aedes aegypti], gi\|157126173\|ref\|XP_001660832...	292.0	[0..8]	[152..5]
gi\|168022547, gi... - gi\|168022547\|ref\|XP_001763801.1\| predicted protein [Physcomitrella patens subsp. patens], gi\|1626850... gi\|58465200, gi\|... - gi\|58465200\|gb\|AAW78462.1\| mago nashi [Physcomitrella patens], gi\|58465189\|gb\|AAW78461.1\| mago nashi...	292.0	[0..6]	[152..7]
gi\|197129864, gi... - gi\|224058235\|ref\|XP_002197766.1\| PREDICTED: putative mago-nashi [Taeniopygia guttata], gi\|197129864\|... gi\|126305686 - gi\|126305686\|ref\|XP_001370837.1\| PREDICTED: similar to Mago-nashi homolog 2 [Monodelphis domestica] gi\|149444019 - gi\|149444019\|ref\|XP_001508653.1\| PREDICTED: similar to Mago-nashi homolog 2 [Ornithorhynchus anatinu... MGN_CHICK - Protein mago nashi homolog OS=Gallus gallus GN=MAGOH PE=2 SV=2	292.0	[0..8]	[152..2]
MGN_EUPLA - Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1	292.0	[0..7]	[152..4]
gi\|33358223, gi\|... - gi\|33358223\|pdb\|1HL6\|D Chain D, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago Complex, gi\|...	291.0	[0..8]	[152..3]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEEEKAAD FYVRYYVGHK GKFGHEFLEF EFRPNGSLRY ANNSNYKNDT MIRKEATVSE  60
   61 SVLSELKRII EDSEIMQEDD DNWPEPDKIG RQELEILYKN EHISFTTGKI GALADVNNSK 120
  121 DPDGLRSFYY LVQDLKCLVF SLIGLHFKIK PI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.221849
Match:	1hl6B
Description:	Mago nashi protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.27048396817643	bayes_pls_golite062009
protein binding	0.967371813449539	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: