YRC Public Data Repository - Protein Structure Prediction

Protein:	ubc-12
Organism:	Caenorhabditis elegans
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc-12.

Description	E-value	Query Range	Subject Range
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	193.0	[0..22]	[179..2]
gi\|109502175 - gi\|109502175\|ref\|XP_001067024.1\| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 E1 (Ubiquitin...	192.0	[0..3]	[179..181]
gi\|83754950 - gi\|83754950\|pdb\|2ESQ\|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly	192.0	[0..23]	[179..2]
gi\|37590333, gi\|... - gi\|41152425\|ref\|NP_955958.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) [Danio rerio...	192.0	[0..24]	[179..1]
gi\|48095652, gi\|... - ref\|XP_392337.1\| similar to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiqu...	191.0	[0..24]	[179..1]
gi\|87239726 - gi\|87239726\|emb\|CAJ57642.1\| putative ubiquitin conjugating enzyme 2 [Oesophagostomum dentatum]	191.0	[0..24]	[179..1]
gi\|116487484, gi... - gi\|118404876\|ref\|NP_001072891.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog) [Xenopus (Silur... gi\|54311502, gi\|... - gi\|54311502\|gb\|AAH84849.1\| LOC495381 protein [Xenopus laevis], gi\|49899030\|gb\|AAH76728.1\| Ube2d2-pro...	191.0	[0..24]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLQKRING NNEDGRYLET RIAVRDKLLA QELQQLETAL RDQKQKLWHL EVPSTSCLHE  60
   61 LELTVTPQEG IYRGGKFRFK ITVPPEYNNV PPVVKCLTKV WHPNINEDGS ICLSILRQNS 120
  121 LDQYGWRPTR NLTDVVHGLV SLFNDLMDFN DALNIQAAQM WSQNRESFNH RVREYISRYC 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2ediA
Description:	No description for 2ediA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits