YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: srz-31
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srz-31.

Description E-value Query
Range
Subject
Range
srz-56 - 7TM chemoreceptor, srz family status:Predicted UniProt:Q9N5W5 protein_id:AAF39766.2
199.0 [0..1] [313..1]

Back

Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTAKVLENV KAMGVLRLFV TVSFYGILIT GFFLNLLIFP FYMYVYKKNK ENDGTTPLSP  60
   61 VTNHFYKMVR TVYALPMCSI VIYILKTFIA VENPVIGDLL MDIIYVFLYI MYLIIQVYHL 120
  121 LIFLLAVGRF LLYFFPKTKE TVLSAQNILQ RKVKYIYALF IVKDFIFLLC LEIGNSIGSK 180
  181 RRVELAKNCY AAIFFSINLL IIISAILYIP IVRSVGKLAI VLSAKQSKPQ KYILWQTMIV 240
  241 FIFKMVTSFV FIDFFLDKAA VTFELIPYII LTDIVITPLI IQISYLGFNK RNIGILLSTL 300
  301 KILPFSNCLA RKTSTVHPMR RVIQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.983
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle