YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16053
Organism:	Caenorhabditis elegans
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16053.

Description	E-value	Query Range	Subject Range
gi\|187022777, gi... - gi\|39586567\|emb\|CAE73694.1\| Hypothetical protein CBG21205 [Caenorhabditis briggsae], gi\|187022777\|em... gi\|157776546 - gi\|157776546\|ref\|XP_001666339.1\| hypothetical protein CBG21205 [Caenorhabditis briggsae AF16]	268.0	[0..1]	[160..1]
gi\|114663046 - gi\|114663046\|ref\|XP_001160459.1\| PREDICTED: similar to CGI-128 protein isoform 2 [Pan troglodytes] ENSCJAT00000032289 - null	248.0	[0..2]	[156..4]
gi\|113565303, gi... - gi\|115460264\|ref\|NP_001053732.1\| Os04g0595200 [Oryza sativa (japonica cultivar-group)], gi\|113565303...	244.0	[0..6]	[156..5]
FAM96B - family with sequence similarity 96, member B	240.0	[0..5]	[156..11]
gi\|76640726 - gi\|76640726\|ref\|XP_871232.1\| PREDICTED: similar to UPF0195 protein FAM96B [Bos taurus]	238.0	[0..5]	[156..11]
gi\|49900500, gi\|... - gi\|68364030\|ref\|XP_686385.1\| PREDICTED: hypothetical protein isoform 1 [Danio rerio], gi\|50539966\|re...	237.0	[0..2]	[156..3]
gi\|109508323, gi... - ref\|XP_214626.1\| similar to Hypothetical protein CGI-128 homolog [Rattus norvegicus], gi\|221325680\|r...	237.0	[0..5]	[156..13]
MIP18_MOUSE - Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=1 SV=1	237.0	[0..5]	[156..11]
gi\|73957533 - gi\|73957533\|ref\|XP_854044.1\| PREDICTED: similar to Hypothetical UPF0195 protein CGI-128 [Canis famil...	236.0	[0..5]	[156..155]
AE7_ARATH - Protein AE7 OS=Arabidopsis thaliana GN=AE7 PE=1 SV=2	235.0	[0..6]	[160..5]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQERLDNAN PTLFDSKPRH RPVTGTERDE SVEDPIDSWE IFDLIRDIND PEHPYTLEQL  60
   61 NVVQEELIKV FIDEEETFVK VNFTPTIPHC SMATLIGLAI RVKLLRSLHP KVKVSVSITP 120
  121 GSHSTEESIN RQLADKERVA AAMENQGLMH AVNECLRVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.11
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits