YRC Public Data Repository - Protein Structure Prediction

Protein:	bli-5
Organism:	Caenorhabditis elegans
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bli-5.

Description	E-value	Query Range	Subject Range
gi\|187022766, gi... - gi\|39586578\|emb\|CAE73705.1\| Hypothetical protein CBG21218 [Caenorhabditis briggsae], gi\|187022766\|em... gi\|157776524 - gi\|157776524\|ref\|XP_001666328.1\| hypothetical protein CBG21218 [Caenorhabditis briggsae AF16]	152.0	[0..4]	[201..1]
gi\|197102775 - gi\|197102775\|ref\|NP_001127069.1\| alpha-1-microglobulin/bikunin precursor [Pongo abelii] gi\|56403596 - gi\|56403596\|emb\|CAI29600.1\| hypothetical protein [Pongo abelii]	137.0	[0..38]	[196..183]
gi\|114626320 - gi\|114626320\|ref\|XP_001155186.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	136.0	[0..38]	[196..183]
gi\|247163 - gi\|247163\|gb\|AAB21782.1\| polyprotein 1-microglobulin/bikunin [Rattus sp.] AMBP_RAT - Protein AMBP OS=Rattus norvegicus GN=Ambp PE=1 SV=1	135.0	[0..35]	[197..179]
gi\|208965810 - gi\|208965810\|dbj\|BAG72919.1\| alpha-1-microglobulin/bikunin precursor [synthetic construct] AMBP - alpha-1-microglobulin/bikunin precursor	135.0	[0..38]	[196..183]
gi\|1882 - gi\|1882\|emb\|CAA36306.1\| unnamed protein product [Sus scrofa]	135.0	[0..39]	[197..168]
AMBP_MOUSE - AMBP protein precursor [Contains: Alpha-1-microglobulin; Inter-alpha-trypsin inhibitor light chain -...	133.0	[0..39]	[197..183]
AMBP_BOVIN - Protein AMBP OS=Bos taurus GN=AMBP PE=1 SV=2	132.0	[0..39]	[196..184]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIHNSFIL LMLMISICFC EKCLTNEECD LKWPDAICVR GRCRCSENTI RKKSASREWV  60
   61 CLATNDATGN SGPPLTCPTP EGAGYQVMYR KDGEPVKCSS KKKPDTCPEG FECIQGLSIL 120
  121 GALDGVCCPD RAKTCVHPIF DHPDDGYLSR WGFDGEQCIE FKWNPERPSS ANNFKTRAHC 180
  181 EDYCIGSING ITNYHQSNFH LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0632734897298209	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: