YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE16028
Organism: Caenorhabditis elegans
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16028.

Description E-value Query
Range
Subject
Range
CE09553 - status:Partially_confirmed UniProt:O16719 protein_id:AAB66167.1
444.0 [0..1] [332..1]

Back

Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKARRLFLS FVVIWSFCYF FINVPADKHP KQEVCVCKSA ITGKSYNFCY RDPQNLNSIG  60
   61 KKFNCSLLST LEDLGIISDH SR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSNVTDVLRN QSNVVFASST SDDHMHLSLK SYKSVRRFHP RHKYILYGLN MSEAFIEKLP  60
   61 QRDKHFEFRV FNTSQYPSFV NNWLTYNFKP LLMAQMLKEY KAVWWIDAHI ELLKSNISRN 120
  121 LQKEIILKRN SSYFASVVSL SDTSHSNFAV LNPAVLTYFP TSSMRLLQRQ RHVAAGLIFL 180
  181 PRTRYTMQLF KWWILCALTE ECMNPPGSRL RCVFRRDRYK HPGHCFRFDQ SVLNLLLLND 240
  241 FQDYRRYYSK KLSESFLRMV D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 1ss9A
Description: Crystal Structural Analysis of Active Site Mutant Q189E of LgtC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.2097350467072 bayes_pls_golite062009
transferase activity 0.75347715535193 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle