| Protein: | CE16006 |
| Organism: | Caenorhabditis elegans |
| Length: | 203 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16006.
| Description | E-value | Query Range |
Subject Range |
|
|
175.0 | [0..1] | [203..1] |
|
|
130.0 | [0..1] | [167..13] |
|
|
123.0 | [0..1] | [190..13] |
|
|
122.0 | [0..26] | [197..217] |
|
|
119.0 | [0..9] | [201..16] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MSVEASNQEN SLSSFLLKCA FPAGTTPPLL SPPSSSGSYE EAQFSLFVNQ NETEQKLFSN 60
61 QSLANRDPCT IPDELHQEMK SLKKKEEAF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.371 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.332 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.331 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.302 | a.118.1 | ARM repeat |
| View | Download | 0.297 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [90-203] |
1 11 21 31 41 51
| | | | | |
1 KTSLCGFHRR GQKCAYGEKC KFAHSVHELR FPQTKRNHRN YKTVLCNNFS TTGHCKYGIR 60
61 CQFIHRSMNS TSSNQSNKME NITIDLNVQS DVFRAFALDS TSLLPNWHCS ALLQ
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
