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View Structure Prediction Details

Protein: CE15964
Organism: Caenorhabditis elegans
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15964.

Description E-value Query
Range
Subject
Range
gi|157746561 - gi|157746561|ref|XP_001668376.1| Hypothetical protein CBG12370 [Caenorhabditis briggsae AF16]
gi|187029503, gi... - gi|39589739|emb|CAE66974.1| Hypothetical protein CBG12370 [Caenorhabditis briggsae], gi|187029503|em...
454.0 [0..1] [369..1]

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Predicted Domain #1
Region A:
Residues: [1-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKDKREFN ETDEIVISKE KLDSFVLECL AKAGCTGDHA QQLAETLLCS DYRGHYSHGI  60
   61 NRLHIYVHDL MMKSTAVTGT PQVLKSKGST AWVDGNNLLG PVVGNFCMQL AVEKAKEFGI 120
  121 GWVVCRNSNH FGIAGWYADF ACRNGLVGMA FTNTSPCVFP TGSREKSLGS NPICMAAPGM 180
  181 EGDSFFLDMA STTVAYGKIE VVDRKGETYI PGSWGADKNG DETHNPKEVL DGGGLQPLGG 240
  241 SEITGGYKGT GLCMMVEVLC GIMGGSAFGK NIRQWQTTSK TADLGQCFVA IDPECFAPGF 300
  301 SNRLQEFCDE TRNLNPINPS RPPQVPGDPE RAHMNMCDDL GGIVYKKKQL DHLKNLADRL 360
  361 GVIMRLVDEK PQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 1v9nA
Description: Structure of Malate Dehydrogenase from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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