YRC Public Data Repository - Protein Structure Prediction

Protein:	CE15854
Organism:	Caenorhabditis elegans
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15854.

Description	E-value	Query Range	Subject Range
gi\|187027184, gi... - gi\|39580418\|emb\|CAE69300.1\| Hypothetical protein CBG15355 [Caenorhabditis briggsae], gi\|187027184\|em...	241.0	[0..1]	[242..1]
gi\|12003268, gi\|... - gi\|9368518\|emb\|CAB98201.1\| c3orf1 hypothetical protein, M5-14 similar to (AE003703)140up gene produc...	183.0	[0..39]	[237..2]
gi\|55620860 - gi\|55620860\|ref\|XP_516667.1\| PREDICTED: similar to c3orf1 hypothetical protein, M5-14 similar to (AE...	182.0	[0..39]	[237..2]
TIDC1_RAT - Complex I assembly factor TIMMDC1, mitochondrial OS=Rattus norvegicus GN=Timmdc1 PE=2 SV=1	174.0	[0..39]	[237..2]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	172.0	[0..97]	[241..2]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWFGFGGNP TDTPSSSAEV SAAPIDLSAG MNFSVPGFDA PAPEPSVPDH SPFPAAPVLA  60
   61 LDQLKSAGVG VSRQMTPYVQ MDPSMFASQQ PQYIMPEGGV A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGKFEFALG HIGWAVGGAF GVGCARGALG ELMNPETRKM VGKPWMTRMV NATMKHGSGF  60
   61 AQPSGAIVFM YSALEIGLRS VRAEDELNGF GAGALTGAIY RSPHGLKASG VGALVGLGIA 120
  121 AAWTLSSTDS RQRLSEMFSN H

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.522879
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits