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View Structure Prediction Details

Protein: CE15805
Organism: Caenorhabditis elegans
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15805.

Description E-value Query
Range
Subject
Range
gi|187035467, gi... - gi|39589965|emb|CAE60963.1| Hypothetical protein CBG04695 [Caenorhabditis briggsae], gi|187035467|em...
gi|157765264 - gi|157765264|ref|XP_001674975.1| Hypothetical protein CBG04695 [Caenorhabditis briggsae AF16]
170.0 [0..1] [243..9]
CE27357 - status:Confirmed UniProt:Q23615 protein_id:CAA98068.2
161.0 [0..25] [226..43]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSSKVAFTL VVSIAIVTAV PLGGILGGNG QGGLGGILGG GEGGLGGILG NGGLGGILGG  60
   61 NGLGGILGGE DGGLGGIIGQ LLGSANATDG LLGIINPADL LDLSLLGDGL T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.974
Match: 2bteB
Description: Thermus thermophilus Leucyl-tRNA synthetase complexed with with a tRNAleu transcript in the post-editing conformation and a post- transfer editing subsrate analogue
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [112-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQIIELVKKI PGSALPRVQE ILSNADNLGV DEVISKLNGL VPGLGDELNN LISTIFTLIK  60
   61 QLLNEVADIL QSLPDILGKL SKIVDDKNLT SIEKNNAINQ LKGTNKIELN TIIFIITQLL 120
  121 NGGALPELPP TPINV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.21467
Match: PF02520.8
Description: No description for PF02520.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle