| Protein: | trt-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 561 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trt-1.
| Description | E-value | Query Range |
Subject Range |
|
|
272.0 | [0..8] | [558..18] |
|
Region A: Residues: [1-209] |
1 11 21 31 41 51
| | | | | |
1 MAPTIKSSLT TLHEEIRKYD KRRHWNTIIR KSAHLSLVRN IFKKKRRQKL NYRHMSTFLA 60
61 SSENISNIRD TVVLLEINKL SQSILSSRNI FELRKLKPTR KMVEIEHCFV SKNDTFVACS 120
121 KLISMFHLEK YIGSTNCANI LEWITKMLNN GGYHKMKPFV YKEAPFTRAF RASKVMKNVD 180
181 PNVKRNIQTS IVNNLKSGVH WWALMALRQ
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [210-274] |
1 11 21 31 41 51
| | | | | |
1 VMIPIVIKEE RVLLWRDGYL NILTKEIKDF KQRYIVQKAP HFIRPNVATF KLSISRQKLR 60
61 PLFKR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [275-561] |
1 11 21 31 41 51
| | | | | |
1 KAIDKKTETM QWKRLNSMLS WCLERSGVYR HTIRDSCKKV SDFLKKNSQN SKIIGYTADV 60
61 SKCFSTVNHD VLISIIDRLF SQEHDIYTVC GKGRNHGGFH KLIFCSAGTE LNAHEALRRK 120
121 MELKGVFNFE VCYREMSSST TLYSVIRTTL STYYYKRGPT SWRITKGVPQ GHPISSNLAH 180
181 MYLNNFEQKY WSNEKEDSRI VFCRYEDDFI FITTENSLFE KMMKPLSTGN NTHFLTANPK 240
241 KFKKSERCGA SQVLQWCGVK LDFQSGNCFI RRRCKDGVAR QFLIKLQ
|
| Detection Method: | |
| Confidence: | 12.045757 |
| Match: | 1rw3A |
| Description: | The crystal structure of the monomeric reverse transcriptase from Moloney murine leukemia virus |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.518931870161593 | bayes_pls_golite062009 |
| transferase activity | 0.35636561630516 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.32441153240842 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.29860211454192 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.0603497936698201 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.0602875211585996 | bayes_pls_golite062009 |
