YRC Public Data Repository - Protein Structure Prediction

Protein:	tin-13
Organism:	Caenorhabditis elegans
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tin-13.

Description	E-value	Query Range	Subject Range
gi\|39589732, gi\|... - gi\|39589732\|emb\|CAE66967.1\| Hypothetical protein CBG12362 [Caenorhabditis briggsae], gi\|187029496\|em... gi\|157746547 - gi\|157746547\|ref\|XP_001668369.1\| Hypothetical protein CBG12362 [Caenorhabditis briggsae AF16]	118.0	[0..1]	[108..1]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	105.0	[0..23]	[102..124]
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	102.0	[0..5]	[83..325]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	99.0	[0..9]	[89..165]
AGAP002277-PA - mitochondrial import inner membrane translocase subunit Tim13\|protein_coding\|2R:18513486:18513922:1\|... gi\|55246223, gi\|... - gi\|58376102\|ref\|XP_307903.2\| AGAP002277-PA [Anopheles gambiae str. PEST], gi\|55246223\|gb\|EAA03740.2\|...	96.0	[0..5]	[91..1]
gi\|91092938 - gi\|91092938\|ref\|XP_972097.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 13 ho...	95.0	[0..5]	[94..1]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	95.0	[0..16]	[101..15]
gi\|49118898 - gi\|49118898\|gb\|AAH72975.1\| Timm13 protein [Xenopus laevis]	94.0	[0..11]	[94..21]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	94.0	[0..8]	[85..613]
gi\|47225684 - gi\|47225684\|emb\|CAG08027.1\| unnamed protein product [Tetraodon nigroviridis]	94.0	[0..6]	[94..7]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLLDVETL KKLSPEQQEQ VISGVKQQAA LANAQNLVTD ISEKCTNKCI TAPGSSLASG  60
   61 EKQCLQRCMD RFMESWNLVS QTLQKRLQEE MASSGGMGGG FGQGPSFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits