YRC Public Data Repository - Protein Structure Prediction

Protein:	CE15652
Organism:	Caenorhabditis elegans
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15652.

Description	E-value	Query Range	Subject Range
gi\|77954187, gi\|... - gi\|77954187\|ref\|ZP_00818586.1\| thiol:disulfide interchange protein DsbE, putative [Marinobacter aqua...	143.0	[0..1]	[171..1]
gi\|51856560, gi\|... - gi\|51892871\|ref\|YP_075562.1\| cytochrome C biogenesis protein [Symbiobacterium thermophilum IAM 14863...	140.0	[0..1]	[170..54]
gi\|56420614, gi\|... - gi\|56420614\|ref\|YP_147932.1\| thiol:disulfide interchange protein (thioredoxin) [Geobacillus kaustoph...	137.0	[0..21]	[166..36]
gi\|94501075, gi\|... - gi\|94501075\|ref\|ZP_01307599.1\| thiol:disulfide interchange protein DsbE, putative [Oceanobacter sp. ...	135.0	[0..5]	[176..7]
gi\|83633422, gi\|... - gi\|83645379\|ref\|YP_433814.1\| Thiol-disulfide isomerase and thioredoxins [Hahella chejuensis KCTC 239...	135.0	[0..4]	[171..8]
DSBE_PSEFC - Thiol:disulfide interchange protein DsbE OS=Pseudomonas fluorescens biotype C GN=dsbE PE=3 SV=1 DSBE_PSEFL - (P52237) Thiol:disulfide interchange protein dsbE (Cytochrome c biogenesis protein ccmG)	134.0	[0..5]	[178..15]
gi\|89208371, gi\|... - gi\|89208371\|ref\|ZP_01186881.1\| ResA protein [Bacillus weihenstephanensis KBAB4], gi\|89153687\|gb\|EAR7... gi\|229132379, gi... - gi\|229132379\|ref\|ZP_04261233.1\| Thiol-disulfide oxidoreductase resA [Bacillus cereus BDRD-ST196], gi...	134.0	[0..5]	[168..16]
gi\|88787696, gi\|... - gi\|88808708\|ref\|ZP_01124218.1\| thioredoxin peroxidase [Synechococcus sp. WH 7805], gi\|88787696\|gb\|EA...	133.0	[0..24]	[175..7]
gi\|228900152, gi... - gi\|228900152\|ref\|ZP_04064385.1\| Thiol-disulfide oxidoreductase resA [Bacillus thuringiensis IBL 4222... gi\|75764339, gi\|... - gi\|75764339\|ref\|ZP_00743865.1\| Thiol:disulfide interchange protein tlpA [Bacillus thuringiensis sero...	133.0	[0..5]	[168..16]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSLLGSSF LRSASGNFTK FASIRNAHFL SSVPMKKRGV DGNLPKDYFE NKTVVVYFSA  60
   61 GWCGSCKFLT PKIKKFYNAV KESDAGKNLE IVWVSKDKEA AHQEEYYEKN LPDWPYIPFG 120
  121 DENIQKLSEK YKAVVIPVLK LVNSNGDVVH DRVRADVEAG IKADPVKTME EWKKLLNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1qq2A
Description:	Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits